| A tale of two landscapes : the Irish sea in prehistory | Waddell, John | Article in Book | | 1994 |
| A tour of Rathcroghan | Waddell, John | Article in Book | | 1994 |
| An archaeological survey of Temple Brecan, Aran | Waddell, John | Article in Journal | | 1973 |
| An unpublished High Cross on Aran, county Galway | Waddell, John | Article in Journal | | 1982 |
| Appendix 3 : Radicarbon dates from archaeological sites on Clare Island | Gosling, PaulWaddell, John | Article in Book | | 2007 |
| Archaeology and Celtic myth : an exploration | Waddell, John | Monograph or Collective Volume | Four Courts | 2014 |
| Boswell's 'ogam' | Waddell, John | Article in Book | | 2009 |
| Continuity, cult and contest | Waddell, John | Article in Book | | 2011 |
| Equine cults and Celtic goddesses | Waddell, John | Article in Journal | | 2018 |
| Excavation at 'Dathi's Mound', Rathcroghan, Co. Roscommon | Waddell, John | Article in Journal | | 1987 |
| Foundation myths : the beginnings of Irish archaeology | Waddell, John | Monograph or Collective Volume | Wordwell | 2005 |
| Introduction | Gosling, PaulManning, ConlethWaddell, John | Article in Book | | 2007 |
| Knocknagur, Turoe and local enquiry | Waddell, John | Article in Journal | | 1985 |
| L'archéologie et la mythologie Celtique | Waddell, John | Monograph or Collective Volume | Sidestone Press | 2022 |
| Later Prehistory in Sligo | Waddell, John | Article in Book | | 2024 |
| M. V. Duignan's excavations at Kiltiernan, Co.Galway, 1950-1953 | Waddell, John, Clyne, Miriam | Article in Journal | | 1995 |
| New survey of Clare Island, Vol. 4 : the abbey | | Monograph or Collective Volume | Royal Irish Academy | 2005 |
| New survey of Clare Island, vol. 5 : archaeology | | Monograph or Collective Volume | Royal Irish Academy | 2007 |
| On Turoe and Castlestrange | Waddell, John | Article in Journal | | 2018 |
| Pagan Ireland : ritual and belief in another world | Waddell, John | Monograph or Collective Volume | Wordwell | 2023 |
| Past imperfect : women in ancient Europe | Waddell, John | Article in Journal | | 1990 |
| Rathcroghan : a royal site in Connacht | Waddell, John | Article in Journal | | 1983 |
| Rathcroghan : archaeological and geophysical survey in a ritual landscape | Barton, KevinFenwick, Joseph,Waddell, John, | Monograph or Collective Volume | Wordwell | 2009 |
| Roscommon in later prehistory - a land of kings and heroes? | Waddell, John | Article in Book | | 2018 |
| Seeing beneath Rathcroghan | Waddell, John | Article in Journal | | 1995 |
| The book of Aran : the Aran Islands Co. Galway | Feehan, JohnWaddell, John | Monograph or Collective Volume | Tir Eolas | 1994 |
| The book of Aran : the Aran Islands, Co. Galway | | Monograph or Collective Volume | [s.n.] | 1994 |
| The Cave of CrĂșachain and the Otherworld | Waddell, John | Article in Book | | 2014 |
| The cordoned urn tradition | Waddell, John | Article in Book | | 1995 |
| The elusive image | Waddell, John | Article in Book | | 2009 |
| The first people : the prehistoric Burren | Waddell, John | Article in Book | | 1991 |
| The innermost secrets of Rathcroghan mound | Barton, KevinFenwick, JoeGeraghty, LouiseWaddell, John | Article in Journal | | 2006 |
| The invasion hypothesis in Irish prehistory | Waddell, John | Article in Journal | | 1978 |
| The Peakaun site : Duignan's 1944 investigations | Holland, PatrickWaddell, John | Article in Journal | | 1990 |
| The prehistoric archaeology of Ireland | Waddell, John | Monograph or Collective Volume | Galway University Press|Wordwell | 2022 |
| The question of the Celticization of Ireland | Waddell, John | Article in Journal | | 1991 |
| The tercentenary of Presbytery in Ireland | Waddell, John | Article in Journal | | 1942 |