| "A curious old wall ... " and unusual horn-core structure from Carrickfergus, Co. Antrim | Brannon, N. F. (Nick)Murphy, EileenÓ Baoill, Ruairí | Article in Journal | | 1998 |
| "Be thou dead to the world" : leprosy in Ireland, evidence from Armoy, Co. Antrim | Manchester, KeithMurphy, Eileen | Article in Journal | | 1998 |
| 'Farewell to Fermanagh' : aspects of emigration from county Fermanagh | Fitzgerald, Patrick | Article in Book | Geography Publications | 2004 |
| A bronze age cist burial at Glebe, Rathlin Island, County Antrim | Carver, NaomiMcGranaghan, ClareMurphy, EileenSloan, Brian | Article in Journal | | 2008 |
| A middle to late Bronze age cemetary at Ballintaggart, Loughbrickland, County Down | Heaney, LianneMurphy, Eileen | Article in Book | | 2010 |
| An overview of livestock husbandry and economic practices in the urban environments of post-medieval Ireland | Murphy, Eileen | Article in Book | | 2007 |
| Animal palaeopathology in prehistoric and historic Ireland : a review of the evidence | Murphy, Eileen M. | Article in Book | | 2005 |
| Atypical burial practice and juvenile age-at-death in later medieval Gaelic Ireland: the evidence from Ballyhanna, Co. Donegal | Murphy, Eileen | Article in Book | | 2017 |
| Burial practices | Cassidy, LaraGormley, SarahMcSparron, CormacMurphy, Eileen | Article in Book | | 2022 |
| Children, death and burial: archaeological discourses | | Monograph or Collective Volume | Oxbow Books | 2017 |
| Children’s burial grounds in Ireland (Cilliní) and parental emotions toward infant death | Murphy, Eileen M. | Article in Journal | | 2011 |
| Collon, Co. Louth : the landscape legacy of an eighteenth-century estate | Carey, MichaelCollins, JimCullen, L. M. (Louis Michael)Gleeson, TimLeavy, TonyMurphy, EileenStout, Matthew | Article in Book | | 2015 |
| Conclusions - ordinary lives : the medieval Gaelic people of Ballyhanna | Donnelly, Colm J.McKenzie, Catriona J.Murphy, Eileen M. | Article in Book | | 2015 |
| Decommissioning our dead | Buckley, LaureenMurphy, EileenÓ Donncibhair, Barra | Article in Journal | | 1998 |
| Everyday life | Drain, DeirdreMurphy, EileenO'Reilly, RoisinWhite, Jessica | Article in Book | | 2022 |
| Evidence for leprosy in Medieval Ireland | Manchester, KeithMurphy, Eileen | Article in Book | | 2002 |
| Evoking the white mare : the cult landscape of Sgiath Gabhra and its medieval perception in Gaelic Fir Mhanach | Donnelly, Colm J.FitzPatrick, ElizabethFoley, ClaireMcHugh, RonanMurphy, Eileen | Article in Book | | 2011 |
| Excavations at Boho High Cross, Toneel North, county Fermanagh | Beer, NicholasDonnelly, Colm J.McDonald, PhilipMurphy, Eileen | Article in Journal | | 2003 |
| Fermanagh : history and society : interdisciplinary essays on the history of an Irish county | | Monograph or Collective Volume | Geography Publications | 2004 |
| Funerary processing of the dead in prehistoric Ireland | Murphy, Eileen | Article in Journal | | 2003 |
| Infectious disease | Drain, DeirdreLoyer, JeannaMcAlister, GraceMurphy, Eileen | Article in Book | | 2022 |
| Introduction | Murphy, Eileen,Roulston, William J. | Article in Book | | 2004 |
| It's a dog's life : butchered medieval dogs from Carrickfergus, Co. Antrim | Murphy, EileenÓ Baoill, Ruairí | Article in Journal | | 2000 |
| Life and death in a county Antrim tower house | Hurl, DeclanMurphy, Eileen M. | Article in Journal | | 1996 |
| Life and death in Medieval Gaelic Ireland: the skeletons from Ballyhanna, Co. Donegal | McKenzie, Catriona JMurphy, Eileen M. | Monograph or Collective Volume | Four Courts press | 2018 |
| Lives cut short - Insights from the osteological and palaeopathological analysis of the Ballyhanna juveniles | Murphy, Eileen M. | Article in Book | | 2015 |
| Medieval and post-medieval butchered dogs from Carrickfergus, Co. Antrim, Northern Ireland | Murphy, Eileen M. | Article in Journal | | 2001 |
| Memorialisation, settlement and identity in post-Plantation Ulster. Ardess Old Graveyard, County Fermanagh | Murphy, Eileen M.Parkinson, Eóin W. | Article in Journal | | 2017 |
| Metabolic disease | Drain, DeirdreHalstead, LaurenLoyer, JeannaMcAlister, GraceMurphy, Eileen | Article in Book | | 2022 |
| Migration and memorials : Irish cultural identity in early nineteenth-century Lowell, Massachusetts | Donnelly, Colm ; Murphy, Eileen ; McKean, Dave ; McKerr, Lynne | Article in Journal | | 2020 |
| New dates from the north and a proposed chronology for Irish court tombs | Jones, CarletonMurphy, EileenSchulting, Rick J.Warren, Graeme | Article in Journal | | 2012 |
| On the line. Archaeological investigation of a 'famine road' in Drummacoorin, Boho, Co Fermanagh | Allmond, GillianDonnelly, ColmMurphy, EileenRuffell, AlastairSloan, Brian | Article in Journal | | 2021 |
| Oral health and diet | Drain, DeirdreHalstead, LaurenLoyer, JeannaMurphy, Eileen | Article in Book | | 2022 |
| Palaeodemography of the Ranelagh population | Drain, DeirdreGormley, SarahLoyer, JeannaMurphy, Eileen | Article in Book | | 2022 |
| Physiological stress and levels of frailty | Drain, DeirdreLoyer, JeannaMurphy, EileenWhite, Lisa | Article in Book | | 2022 |
| Radiocarbon dating of human remains from Navan Fort: their implications for understanding the wider ceremonial complex | Gleeson, PatrickMcDowell, JacquelineMurphy, EileenNoble, GordonO'Driscoll, James | Article in Journal | | 2023 |
| Reconstructing the dead man's face - a violent death from medieval Armagh | Gilmore, StephenMurphy, Eileen | Article in Journal | | 2001 |
| Reflections on 30 years of archaeology in Northern Ireland, 1987-2007 | Donnelly, ColmMurphy, Eileen | Article in Journal | | 2017 |
| The Community Archaeology Toolkit: empowering communities to engage in local archaeological research | Campbell, LiamDonnelly, ColmMcDermott, SiobhánMontgomery, HeatherMurphy, Eileen | Article in Journal | | 2020 |
| The excavation of a probable bronze age ring barrow at Molly, County Fermanagh | Denvir, Anne-MarieDunlop, ColinMurphy, EileenSloan, Brian | Article in Journal | | 2011 |
| The excavation of two late bronze age roundhouses at Ballyprior Beg, Island Magee, county Antrim | Armit, IanChurch, MikeCressey, MikeDunne, CatherineGormley, SarahMurphy, EileenNelis, EiméarSuddaby, Ian | Article in Journal | | 2003 |
| The exploratory excavation of an early medieval burial and occupation site at Magheradunbar, County Fermanagh | Curtin, MareseDunlop, ColinMurphy, Eileen | Article in Journal | | 2011 |
| The faunal remains from the inner ditch of Haughey’s fort - third report : 1991 excavation | McCormick, FinbarMurphy, Eileen | Article in Journal | | 1996 |
| The Forgotten Cemetery : Excavations at Ranelagh, Co. Roscommon | | Monograph or Collective Volume | Transport Infrastructure Ireland | 2022 |
| The origins of 'Cilliní' | Donnelly, Colm J.Murphy, Eileen M. | Article in Journal | | 2008 |
| The origins of Cilliní | Donnelly, Colm J.Murphy, Eileen M. | Article in Journal | | 2008 |
| The origins of Cillini in Ireland | Donnelly, Colm J.Murphy, Eileen M. | Article in Book | | 2008 |
| The science of a lost medieval Gaelic graveyard : The Ballyhanna research project | | Monograph or Collective Volume | Transport Infrastructure Ireland | 2015 |
| The sequence of early Christian period horizontal tide mills at Nendrum monastery : an interim statement | Earwood, Caroline,McErlean, Thomas C.Moore, Dermot,Murphy, Eileen | Article in Journal | | 2007 |
| Violence | Drain, DeirdreLoyer, LeannaMurphy, EileenWhite, Lisa | Article in Book | | 2022 |