| Dissent into treason : Unitarians, King-killers and the Society of United Irishmen | Whelan, Fergus | Monograph or Collective Volume | Brandon Books | 2010 |
| Fenians in the foothills: Patrick Doran and the Rising of 1867 | Whelan, Fergus | Article in Journal | | 2017 |
| God-provoking democrat : the remarkable life of Archibald Hamilton Rowan | Whelan, Fergus | Monograph or Collective Volume | New Island | 2015 |
| In defence of modernity - the Ulster Solemn League and Covenant | Whelan, Fergus | Article in Journal | | 2014 |
| May Tyrants Tremble: The Life of William Drennan, 1754-1820 | Whelan, Fergus | Monograph or Collective Volume | Irish Academic Press | 20 |
| Oliver Cromwell: father of Irish republicanism | Whelan, Fergus | Article in Journal | | 2010 |
| The seditious library of Archibald Hamilton Rowan | Whelan, Fergus | Article in Journal | | 2016 |