| Airgialla churches and churches in Donegal | Silke, John J. | Article in Journal | | 1988 |
| Bishop Conor O'Devanney OFM c.1533-1612 | Silke, John J. | Article in Journal | | 1988 |
| Bishop Coyle's pious miscellany | Silke, John J. | Article in Journal | | 1994 |
| Bishop Patrick O'Donnell and Rome | Silke, John J. | Article in Journal | | 2013 |
| Blessed Murray McGroarty | Silke, John J. | Article in Journal | | 1988 |
| By train and bike in Wexford, 1923 | Silke, John J. | Article in Journal | | 2008 |
| Clio is beautiful | Silke, John J. | Article in Journal | | 1979 |
| Colum Cille's teachers | Silke, John J. | Article in Journal | | 1980 |
| Cornelius Denvir and the "Spirit of Fear" | Silke, John J. | Article in Journal | | 1987 |
| Diocese of Raphoe, 1773-1805 | Silke, John J. | Article in Journal | | 1985 |
| Doe in the plantation | Silke, John J. | Article in Journal | | 1992 |
| Donegal and 1916 | Silke, John J. | Article in Journal | | 2016 |
| Hugh O'Neill, the Catholic question and the Papacy | Silke, John J. | Article in Journal | | 1965 |
| Ireland and Europe, 1559-1607 | Silke, John J. | Monograph or Collective Volume | Dundalgan Press | 1966 |
| Irish scholarship and the Renaissance, 1580-1673 | Silke, John J. | Article in Journal | | 1973 |
| J. J. Silke (1884-1960) and the beginnings of the seed potato industry in Donegal | Silke, John J. | Article in Journal | | 1986 |
| Kinsale : the Spanish intervention in Ireland at the end of the Elizabethan wars | Silke, John J. | Monograph or Collective Volume | University P. | 1970 |
| Kinsale : the Spanish intervention in Ireland at the end of the Elizabethan wars | Silke, John J. | Monograph or Collective Volume | Four Courts | 2000 |
| Later relations between the Primate Peter Lombard and Hugh O'Neill | Silke, John J. | Article in Journal | | 1955 |
| Lattice-works, open and closed : some reflections on diocesan archives | Silke, John J. | Article in Journal | | 1990 |
| Old Rathmullan | Silke, John J. | Article in Journal | | 1974 |
| Outward bound from Portnamurray | Silke, John J. | Article in Book | | 2002 |
| Patrick Cardinal O'Donnell | Silke, John J. | Article in Journal | | 1988 |
| Primate Lombard and James I | Silke, John J. | Article in Journal | | 1955 |
| Private Boyle's letter | Silke, John J. | Article in Journal | | 2006 |
| Raphoe and the reformation | Silke, John J. | Article in Book | | 1995 |
| Red Hugh O'Donnell, 1572-1601 : a biographical survey | Silke, John J. | Article in Journal | | 1961 |
| Scariffhollis 1650 | Silke, John J. | Article in Journal | | 2011 |
| Some aspects of the Reformation in Armagh province | Silke, John J. | Article in Journal | | 1984 |
| Some notes on early Christianity in Co. Donegal | Silke, John J. | Article in Journal | | 1987 |
| Spain and the invasion of Ireland, 1601-2 | Silke, John J. | Article in Journal | | 1965 |
| Spanish intervention in Ireland, 1601-2 : Spanish bibliography | Silke, John J. | Article in Journal | | 1963 |
| The 'Drumboe Martyrs' | Silke, John J. | Article in Journal | | 2008 |
| The Irish abroad, 1534-1691 | Silke, John J. | Article in Book | | 1976 |
| The Irish appeal of 1593 to Spain : some light on the genesis of the 'Nine Years' War' | Silke, John J. | Article in Journal | | 1959 |
| The Irish College, Seville | Silke, John J. | Article in Journal | | 1961 |
| The Irish Peter Lombard | Silke, John J. | Article in Journal | | 1975 |
| The last will of Red Hugh O'Donnell | | Article in Journal | | 1984 |
| The Roman Catholic Church in Ireland 1800-1922 : A survey of recent historiography | Silke, John J. | Article in Journal | | 1975 |
| The Spanish expedition to Munster, 1601-2 | Silke, John J., Rev. | Thesis | | 1963 |
| Tír Lugdech | Silke, John J. | Article in Journal | | 1996 |
| Two saints | Silke, John J. | Monograph or Collective Volume | [s.n.] | 1998 |
| Where was 'Obemdub'? | Silke, John J. | Article in Journal | | 1963 |
| Why Aguila landed at Kinsale | Silke, John J. | Article in Journal | | 1963 |