| A history of the Catholic church for schools | O'Doherty, J. F. | Monograph or Collective Volume | National Press | 1943 |
| Historical criticism of the 'Song of Dermot and the Earl' | O'Doherty, J. F. | Article in Journal | | 1938 |
| Laurentius von Dublin und das irische Normannentum | O'Doherty, J. F. | Monograph or Collective Volume | | 1933 |
| Maynooth, 1895-1945 | O'Doherty, J. F. | Article in Journal | | 1945 |
| Obligationes pro annatis provinciae Tuamensis (1413-1548) from a transcript by M.A. Costello | | Article in Journal | | 1963 |
| Rome and the Anglo-Norman invasion of Ireland | O'Doherty, J. F. | Article in Journal | | 1933 |
| St. Laurence O'Toole and the Anglo-Norman invasion | O'Doherty, J. F. | Article in Journal | | 1937 |
| St. Laurence O'Toole and the Anglo-Norman invasion | O'Doherty, J. F. | Article in Journal | | 1938 |
| The Anglo-Norman invasion, 1167-71 | O'Doherty, J. F. | Article in Journal | | 1938 |
| The Confederation of Kilkenny | O'Doherty, J. F. | Article in Book | | 1937 |
| Threnodia Hiberno-Catholica | Conry, MauriceJennings, BrendanO'Doherty, J. F. | Article in Journal | | 1947 |