| "In the service of the republic"? : Wolfe Tone in Bantry Bay | Dunne, Tom, 1939- | Article in Book | Mercier Press | 1997 |
| "The French are on the Say" | Ó Crualaoich, Gearóid | Article in Book | Mercier Press | 1997 |
| "The invasion that never was" : naval and military aspects of the French expedition to Bantry Bay, 1796 | Bartlett, Thomas | Article in Book | Mercier Press | 1997 |
| 'Put them out' : parties and elections, 1948-69 | Murphy, John A. | Article in Book | | 1979 |
| 'The College' : University College Cork | Murphy, John A. | Article in Book | | 2005 |
| A Catholic college : U.C.C. in the 1940s and 1950s | Murphy, John A. | Article in Journal | | 1988 |
| A look at the past, II | Murphy, John A. | Article in Book | | 1986 |
| Association to trade union : the organising of secondary teachers | Murphy, John A. | Article in Journal | | 1986 |
| Burials and bigotry in early nineteenth-century Ireland | Murphy, ClionaMurphy, John A. | Article in Journal | | 2005 |
| Censorship and the moral community | Murphy, John A. | Article in Book | | 1984 |
| Cork : anatomy and essence | Murphy, John A. | Article in Book | | 1993 |
| Cuimhne dhá laoch : MacCurtain and MacSwiney | Murphy, John A. | Monograph or Collective Volume | Cork Public Museum | 1995 |
| De Valera and his times | | Monograph or Collective Volume | Cork University Press | 1983 |
| History and the journal | Murphy, John A. | Article in Journal | | 1991 |
| Inchiquin's changes of religion | Murphy, John A. | Article in Journal | | 1967 |
| Ireland : identity and relationships | Murphy, John A. | Article in Journal | | 1991 |
| Ireland in the Twentieth Century | Murphy, John A. | Monograph or Collective Volume | Gill & Macmillan | 1975 |
| Irish neutrality in historical perspective | Murphy, John A. | Article in Book | | 2000 |
| James Hogan : mentor and colleague | Murphy, John A. | Article in Book | | 2001 |
| Justin MacCarthy, Lord Mountcashel : commander of the first Irish brigade in France | Murphy, John A. | Monograph or Collective Volume | Cork University Press | 1959 |
| Murrough O'Brien, sixth baron and first earl of Inchiquin | Murphy, John A. | Thesis | | 1951 |
| Myself and "the Cruiser" | Murphy, John A. | Article in Book | | 1998 |
| O'Connell and the Gaelic world | Murphy, John A. | Article in Book | | 1984 |
| Post-war society : the ambience of a college | Murphy, John A. | Article in Journal | | 1987 |
| Priests and people in modern Irish history | Murphy, John A. | Article in Journal | | 1969 |
| Queen's College Cork : beginnings | Murphy, John A. | Article in Journal | | 1995 |
| Scholarly publications, newspaper and periodical contributions, Senate speeches and other addresses | Murphy, John A. | Article in Book | | 2005 |
| Six South Munster popular songs and their backgrounds | Murphy, John A. | Article in Journal | | 2008 |
| The achievement of Eamon de Valera | Murphy, John A. | Article in Book | | 1983 |
| The Anglo-Irish treaty and after : the Canadian model and context | Murphy, John A. | Article in Book | | 1988 |
| The College : a history of Queen's/University College Cork, 1845-1995 | Murphy, John A. | Monograph or Collective Volume | Cork University Press | 1996 |
| The European economic community | Murphy, John A. | Article in Book | | 1986 |
| The French are in the bay : the expedition to Bantry Bay, 1796 | | Monograph or Collective Volume | Mercier Press | 1997 |
| The influence of America on Irish nationalism | Murphy, John A. | Article in Book | | 1980 |
| The insurrection in Dublin | Murphy, John A.Stephens, James | Monograph or Collective Volume | Smythe | 1978 |
| The Irish party system, 1938-51 | Murphy, John A. | Article in Book | | 1969 |
| The new I.R.A., 1925-62 | Murphy, John A. | Article in Book | | 1973 |
| The politics of Munster protestants, 1641-9 | Murphy, John A. | Article in Journal | | 1971 |
| The politics of the Munster Protestants, 1641-49 | Murphy, John A. | Article in Journal | | 1971 |
| The Proclamation of the Irish Republic, 1916 | Murphy, John A. (Augustine) | Article in Book | | 2017 |
| The sack of Cashel, 1647 | Murphy, John A. | Article in Journal | | 1965 |
| The support of the Catholic clergy in Ireland, 1750-1850 | Murphy, John A. | Article in Book | | 1965 |
| Thomas Davis: a bicentenary assessment | Murphy, John A. | Article in Journal | | 2014 |
| Tionchar Mheiriceá ar náisiúnachas na hÉireann | Murphy, John A. | Article in Book | | 1979 |
| University College Cork | Murphy, John A. | Article in Book | | 2008 |
| Was it really a 'Godless' college? : response to Professor Holmes | Murphy, John A. | Article in Book | | 1997 |