| 'A real credit to Ireland, and to Dublin': the scholarly achievements of Sir James Ware | Empey, Mark | Article in Book | | 2017 |
| 'And soe let us goe and spare not'. Thomas Wentworth's quest for uniformity and the implications for the Catholic and Protestant churches in Ireland, c.1621-1634 | Empey, Mark | Article in Journal | | 2005 |
| 'Value-free' history? The scholarly network of Sir James Ware | Empey, Mark | Article in Journal | | 2012 |
| 'We are not yet safe, for they threaten us with more violence' : a study of the Cook Street riot, 1629 | Empey, Mark | Article in Book | NA | 2011 |
| Early Stuart Irish warrants, 1623 - 1639 : The Falkland and Wentworth administrations | | Monograph or Collective Volume | Irish Manuscripts Commission | 2015 |
| Ireland, Spain and 'the protection and defence of the Christian religion', c.1622-35 | Empey, Mark | Article in Book | | 2008 |
| Irish warrants - hidden treasures from the East (Riding) | Empey, Mark | Article in Journal | | 2013 |
| Paving the way to prerogative : The politics of Sir Thomas Wentworth c.1614-1635 | Empey, Mark | Thesis | | 2010 |
| Power, prerogative, and the politics of Sir Thomas Wentworth in early Stuart England and Ireland | Empey, Mark | Article in Journal | | 2022 |
| Preserving the past : history, manuscripts and belonging, c.1600-41 | Empey, Mark | Article in Book | Four Courts Press | 2025 |
| Select documents. Sir James Ware's bibliographic lists | | Article in Journal | | 2014 |
| Sore heads and sorrowful days : the cost of underestimating Sir Thomas Wentworth | Empey, Mark | Article in Book | NA | 2006 |
| State intervention in disputes between secular and regular clergy in early seventeenth-century Ireland | Empey, Mark | Article in Journal | | 2018 |
| The interrogation of Gerald Keating: trouble, tension and treason | Empey, Mark | Article in Journal | | 2024 |