| Annals from the Book of Leinster, A.D. 457-1189, with a translation of the Irish | | Article in Book | | 1887 |
| Irische Texte | Stokes, WhitleyWindisch, Ernst | Monograph or Collective Volume | [s.n.] | 1880 |
| Lives of saints from the Book of Lismore | Stokes, Whitley | Monograph or Collective Volume | | 1890 |
| Observations on the necessity of publishing the scriptures in Irish | Stokes, Whitley | Monograph or Collective Volume | | 1806 |
| On the Calendar of Oengus | | Article in Journal | | 1880 |
| Projects for reestablishing the internal peace and tranquility of Ireland | Stokes, Whitley | Monograph or Collective Volume | | 1799 |
| The annals of Tigernach | | Article in Journal | | 1897 |
| The Annals of Ulster | Stokes, Whitley | Article in Journal | | 1897 |
| The Dublin fragment of Tigernach's Annals | | Article in Journal | | 1897 |
| The Gaelic Maundeville | | Article in Journal | | 1899 |
| The Irish abridgment of the 'Expugnatio Hibernica' | Stokes, Whitley | Article in Journal | | 1905 |
| The Irish version of Fierabras | | Article in Journal | | 1899 |
| The martyrology of Oengus the Culdee, critically edited from ten manuscripts, with a preface, translation, notes and indices {Félire Óengusso Céli Dé] | | Monograph or Collective Volume | | 1905 |
| The tripartite life of St. Patrick (Bethu Phátraic), with other documents relating to the saint | | Monograph or Collective Volume | | 1887 |
| Thesaurus Palaeohibernicus : a collection of Old Irish glosses | Stokes, Whitley | Monograph or Collective Volume | Dublin Institute for Advanced Studies | 1975 |
| Three Irish glossaries. Cormac's Glossary, Codex A, (from a manuscript in the library of the Royal Irish Academy), O'Davoren's Glossary (from a manuscript in the library of the British Museum), and a glossary to the Calendar of Oingus the Culdee (from a manuscript in the Library of Trinity College, Dublin) | | Monograph or Collective Volume | Williams and Norgate | 1862 |