| ' Backsliders from the Protestant religion': Apostasy in the 1641 Depositions [with index] | | Article in Journal | | 2012 |
| 'Pirates in our channel': The Cromwellian navy in Ireland, 1649-53 | Murphy, Elaine | Article in Journal | | 2011 |
| A calendar of material relating to Ireland from the High Court of Admiralty, 1641-1660 | | Monograph or Collective Volume | Irish Manuscripts Commission | 2011 |
| Atrocities at sea and the treatment of prisoners of war by the parliamentary navy in Ireland, 1641-1649 | Murphy, Elaine | Article in Journal | | 2010 |
| God's providence: Inchiquin and the survival of Protestant Munster, 1641-1649 | Murphy, Elaine M. | Thesis | | 2000 |
| Intelligence, the English navy and Ireland during the 1640s | Murphy, Elaine | Article in Book | | 2006 |
| Ireland and the war at sea, 1641-1653 | Murphy, Elaine | Monograph or Collective Volume | The Boydell Press | 2012 |
| No affair before us of greater concern : the war at sea in Ireland, 1641-1649 | Murphy, Elaine | Thesis | | 2007 |
| Siege of Duncannon Fort in 1641 and 1642 | Murphy, Elaine | Article in Book | | 2012 |
| The 1641 depositions : a window on life and society in seventeenth-century Ulster | Murphy, Elaine | Article in Book | NA | 2013 |
| The 1641 depositions and the Irish rebellion | | Monograph or Collective Volume | Pickering and Chatto | 2012 |
| The Semples and St. Selskar's | Murphy, Elaine | Article in Journal | | 2005 |
| Two inventories of goods belonging to Sir Hardress Waller in Ireland | Murphy, Elaine | Article in Journal | | 2013 |