| A most calamitous season: famine and fever on N. West Ulster, 1817-18 | Dooher, John | Article in Journal | | 1999 |
| Are our townlands dying? : the northern perspective! | Dooher, Johnny | Article in Journal | | 2011 |
| Donegal and Derry bishops help decide 1911 North Tyrone by-election | Dooher, John | Article in Journal | | 2010 |
| Educating the natives : language, schools and religion in pre Famine Ulster | Dooher, John | Article in Journal | | 2015 |
| Emigrant Ship from West Ulster Founders. Huge loss of life - July 1831 | Dooher, Johnny | Article in Journal | | 2012 |
| From Dublin to Strabane : an Irish doctor's travels in 1810 | Dooher, Johnny | Article in Journal | | 2013 |
| Hollyhill, County Tyrone | Dooher, John | Article in Book | | 1998 |
| Living and working in pre-famine Ulster | Dooher, John | Monograph or Collective Volume | Northern Ireland Centre for Learning Resources | 1991 |
| Local government in Strabane, 1800-1925 | Dooher, John | Article in Book | | 2000 |
| Lurgan man's poignant journey to the Somme battlefields | Dooher, Johnny | Article in Journal | | 2016 |
| Museum and heritage centre reviews. The Somme Heritage Centre [by] Keith Haines; Coyle’s cottage (a museum of Lough Neagh fishermen) [by] Johnny Dooher; Dunfanaghy Workhouse Centre [by] Johnny Dooher; Lifford Old Courthouse [by] Johnny Dooher | Dooher, JohnHaines, Keith | Article in Journal | | 1995 |
| Plantation : aspects of seventeenth-century Ulster society | | Monograph or Collective Volume | Ulster Historical Foundation|Ulster Local History Trust | 2013 |
| Strabane and the north west in the decade of rebellion | Dooher, John | Article in Journal | | 1997 |
| The Catholic church in Strabane since c.1600 | Dooher, John | Article in Book | | 2000 |
| The development of Strabane in the eighteenth century, 1700-1770 | Dooher, John | Article in Book | | 2000 |
| The emergence of a new leadership - Strabane c.1770-1800 | Dooher, John | Article in Book | | 2000 |
| The fair river valley : Strabane through the ages | | Monograph or Collective Volume | Ulster Historical Foundation in association with the Strabane Historical Society | 2000 |
| The growth and development of Strabane, 1800-1850 | Dooher, John | Article in Book | | 2000 |
| Tyrone man's mission from Ameria to save the 1916 Rising | Dooher, Johnny | Article in Journal | | 2016 |
| Tyrone nationalism and the question of partition, 1910-25 | Dooher, John Brendan | Thesis | | 1986 |
| Tyrone Nationalists and Unionists : a danger to the Empire 1912–14! | Dooher, Johnny | Article in Journal | | 2014 |